Multiscale Applications on European e-Infrastructures

The MAPPER project responded to the critical need by developing computational strategies, software and services for distributed multiscale simulations across disciplines, exploiting existing and evolving European e-Infrastructure. This project was driven by the computational needs of seven exemplary multiscale problems from a variety of disciplines including Systems Biology, Fusion, Physiology, Engineering and nano-Material Science. Mapper used and enhanced existing solutions to support the multiscale simulation community, building simulation systems such as GridSpace.

Official project website

MAPPER Presentations

• K. Rycerz: Multiscale Application Support in the MAPPER project , ACC Cyfronet AGH Open Day , Krakow, Poland, 25 November 2013
• E. Ciepiela, D. Harężlak, M. Kasztelnik, B. Wilk, M. Pawlik, J. Meizner, M. Bubak: GridSpace2: Virtual Laboratory in World Wide Web , EGI Community Forum 2013, Manchester, UK, 9 April 2013
• E. Ciepiela, B. Wilk, D. Harężlak, M. Kasztelnik, M. Pawlik, J. Meizner, M. Bubak: GridSpace2 – Towards Science-as-a-Service Model , KU KDM 2013, Zakopane, Poland, 28 February 2013
• K. Rycerz, M. Bubak and WP8 team: MAPPER Multiscale Programming and Execution Tools. WP8 after year 2 , 2nd Project Review, Amsterdam, The Netherlands, 28 November 2012
• K. Rycerz, D. Harężlak, G. Dyk, E. Ciepiela, T. Gubała, J. Meizner, M. Bubak: Programming and Execution of Multiscale Applications , Cracow Grid Workshop 2012, Kraków, Poland, 22 October 2012
• K. Rycerz (speaker), E. Ciepiela, G. Dyk, T. Gubała, D. Harężlak, J. Meizner, M. Bubak: Multiscale Programming and Execution Tools in the MAPPER project , EGI Technical Forum 2012, Workflow community workshop, Prague, Czech Republic, 21 September 2012
• M. Bubak (speaker), G. Harezlak, G. Dyk: Tools for programming and execution of multiscale applications , SCI-BUS, SHIWA, EDGI joint Summer School on Workflows and Gateways for Grids and Clouds - Introducing the latest developments in Grid and Cloud computing, Budapest, Hungary, 2-6 July 2012
• M. Bubak: Multiscale Applications on European e-Infrastructures , Chalmers e-Science initiative seminar , Göteborg, Sweden, 1-2 December, 2011
• M. Bubak, K. Rycerz and WP8 team: MAPPER Multiscale Programming and Execution Tools. WP8 after year 1 , 24 November, 2011
• K. Rycerz and M. Bubak: Component Approach to Distributed Multiscale Simulations , SIMULTECH 2011, 1st International Conference on Simulation, Modeling Technologies and Applications, Noordwijkerhout, The Netherlands, 29-31 July, 2011
• K. Rycerz, E. Ciepiela, J. Kocot, M. Nowak, P. Pierzchała, M. Bubak: Towards an Environment for Multiscale Applications , KUKDM in Zakopane, Poland (2011)
• K. Rycerz, E. Ciepiela, D. Harezlak, M. Bubak: Towards Multiscale Computing Tools based on GridSpace , CGW'10 (2010)

MAPPER Posters and Flyers

• Semantic Integration for Model-based Life Science Applications , T. Gubala, K. Prymula, P. Nowakowski, M. Bubak. In: SIMULTECH 2013 Proceedings of the 3rd International Conference on Simulation and Modeling Methodologies, Technologies and Applications, Reykjavik, Iceland 29 - 31 July, 2013, pp. 74-81.

• Efficient Execution of Grid-based Multiscale Applications for Metallurgical Industry , Łukasz Rauch, Mateusz Ambroziński, Krzysztof Bzowski, Maciej Pietrzyk, Eryk Ciepiela, Katarzyna Rycerz, Bartosz Wilk, Marian Bubak; Summer School on Grid and Cloud Workflows and Gateways 2013, SZTAKI, Budapest, Hungary, 1-6 July 2013.

• Composing, Executing and Sharing Multiscale Applications in an Integrated Environment , Katarzyna Rycerz, Eryk Ciepiela, Daniel Harężlak, Maciej Pawlik, Tomasz Gubała, Jan Meizner, Marian Bubak; Summer School on Grid and Cloud Workflows and Gateways 2013, SZTAKI, Budapest, Hungary, 1-6 July 2013.

• Programming and Execution of Multiscale Applications , Katarzyna Rycerz, Eryk Ciepiela, Tomasz Gubała, Daniel Harężlak, Grzegorz Dyk, Jan Meizner, and Marian Bubak; poster presented during Cracow Grid Workshop 2012 ; 22-24 October 2012, Kraków, Poland.

• Programming and Execution of Multiscale Applications on Distributed Infrastructures (PPT ), Katarzyna Rycerz, Eryk Ciepiela, Tomasz Gubała, Daniel Harężlak, Joanna Kocot, Grzegorz Dyk, Jan Meizner and Marian Bubak; poster presented during Cracow Grid Workshop 2011; 7-9 November 2011, Kraków, Poland (see related presentation ).

MAPPER Deliverables

• D8.1-ArchitectureInterfaces-CYF-v2.13.pdf
• D8.2-FirstPrototypeWithDemonstration-CYF-v1.7.pdf
• D8.3-SecondPrototype-CYF-v1.1.pdf
• D8.4-FinalValidation-CYF-v1.5.pdf

MAPPER Videos

Multiscale Application Designer and GridSpace Experiment Workbench used on the example of Irrigation Canals simulation (thanks to Mohamed Ben Belgacem and Bestien Chopard, University of Geneva) {{ youtube kZ8QAvg07GE}} Provenance Tracking system used for Irrigation Canals simulation {{ youtube p9hToOpqV4A}}

Multiscale Application Designer and GridSpace Experiment Workbench used on the example of nanomaterials simulation with AHE (thanks to Stefan Zasada and Derek Groen, UCL, UK) {{ youtube YGzk2xSObGs}}

Presentation of MAPPER Memory, Multiscale Application Designer and GridSpace Experiment Workbench tools on the example of “Ant and Elephant” application {{ youtube zb8qCn6jLIM}}

Generation and execution of skeleton “ant and elephant” application in GridSpace and registration in MaMe – loosely coupled part with nanoscale module presented at WP7-8 meeting in Krakow, 4-6.07.2011 {{ youtube kS-X5st0OVg}}

Generation and execution of skeleton “ant and elephant” application in GridSpace and registration in MaMe – tightly coupled part presented at WP7-8 meeting in Krakow, 4-6.07.2011 {{ youtube HuMffoJwf8M}}

HLA-based multiscale dense stellar systems simulation in GridSpace – case 1 presented at kick-off meeting Amsterdam, 6-8.10.2010 {{ youtube JckRj3hz-uo}}

HLA-based multiscale dense stellar systems simulation in GridSpace – case 2 presented at kick-off meeting Amsterdam, 6-8.10.2010 {{ youtube KeER-W6te2E}}