Publications of Tomasz Gubala

2022

Paulina Szadkowska, Adria-Jaume Roura, Bartosz Wojtas, Kamil Wojnicki, Sabina Licholai, Tomasz Waller, Tomasz Gubala, Kacper Zukowski, Michal Karpeta, Kinga Wilkus, Wojciech Kaspera, Sergiusz Nawrocki, Bozena Kaminska: Improvements in Quality Control and Library Preparation for Targeted Sequencing Allowed Detection of Potentially Pathogenic Alterations in Circulating Cell-Free DNA Derived from Plasma of Brain Tumor Patients. Cancers (Basel). 2022 Aug 12;14(16):3902. https://doi.org/10.3390/cancers14163902 (2022)

Bubak M., Czechowicz K., Gubała T., Hose D. R., Kasztelnik M., Malawski M., Meizner J., Nowakowski P. and Wood S.: The EurValve model execution environment. Interface Focus. 11: 20200006. http://doi.org/10.1098/rsfs.2020.0006 (2020)

Szadkowska P, Wojtas B, Waller T, Licholai S , Zukowski K, Gubala T, Karpeta M; Wilkus K, Nawrocki S, Kaspera W, Kaminska B.: Targeted next generation sequencing of cell-free circulating tumor DNA from blood sample as a diagnostic tool for glial and metastatic brain tumor patients. EACR (European Association for Cancer Research) Virtual Conference on Liquid Biopsies, 18-19.11.2020 (2020)

Szadkowska P, Wojtas B, Waller T, Licholai S , Zukowski K, Gubala T, Karpeta M; Wilkus K, Nawrocki S, Kaspera W, Kaminska B.: Targeted next generation sequencing of cell-free circulating tumor DNA from blood sample as a diagnostic tool for glial and metastatic brain tumor patients. ISLB (International Society of Liquid Biopsy) Annual Virtual Congress, 30.10.2020. (2020)

L. Martí-Bonmatí, Á. Alberich-Bayarri, R. Ladenstein, I. Blanquer, J. Damian Segrelles, L. Cerdá-Alberich, P. Gkontra, B. Hero, J.M. García-Aznar, D. Keim, W. Jentner, K. Seymour, A. Jiménez-Pastor, I. González-Valverde, B. Martínez de las Heras, S. Essiaf, D. Walker, M. Rochette, M. Bubak, J. Mestres, M. Viceconti, G. Martí-Besa, A. Cañete, P. Richmond, K. Y. Wertheim, T. Gubala, M. Kasztelnik, J. Meizner, P. Nowakowski, S. Gilpérez, A. Suárez, M. Aznar, G. Restante and E. Neri: PRIMAGE project: predictive in silico multiscale analytics to support childhood cancer personalised evaluation empowered by imaging biomarkers, European Radiology Experimental 4:22, https://doi.org/10.1186/s41747-020-00150-9 (2020)

Szadkowska P, Mieczkowski J, Zukowski K, Waller T, Licholai S, Gubala T, Karpeta M; Wilkus K, Nawrocki S, Kaspera W, Kaminska B.: Targeted next generation sequencing of cell-free circulating tumor DNA from blood samplesas a diagnostic tool for glioma patients. EACR-ESMO Joint Conference on Liquid Biopsies, Bergamo, Italy, 15 - 17 Maj 2019; Książka abstraktów str. 136, poster nr 92 (2019)

A. H. Eckes, T. Gubała, P. Nowakowski, T. Szymczyszyn, R. Wells, J. A. Irwin, C. Horro, J. M. Hancock, G. King, S. C. Dyer, W. Jurkowski: Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data [version 1; referees: 3 approved]. F1000Research 2017, 6:465 (doi: 10.12688/f1000research.11301.1) (2017)

M. Bubak, B. Balis, D. Harezlak, M. Kasztelnik, P. Nowakowski, T. Bartynski, T. Gubala, M. Malawski, M. Pawlik, B. Wilk: The ISMOP IT platform for smart levee monitoring and flood decision support. In: KU KDM 2016 Ninth ACC Cyfronet AGH HPC Users' Conference, Zakopane 16–18 March 2016, Proceedings / ed. Kazimierz Wiatr, Jacek Kitowski, Marian Bubak. — Kraków : ACC Cyfronet AGH, 2016. — ISBN: 978-83-61433-18-7, pp 35-36 (2016)

T. Waller, T. Gubała, K. Sarapata, M. Piwowar and W. Jurkowski: DNA microarray integromics analysis platform. BioData Mining 2015, 8:18 (2015)

K. Rycerz, M. Bubak, E. Ciepiela, D. Harezlak, T. Gubala, J. Meizner, M. Pawlik, B. Wilk: Composing, Execution and Sharing of Multiscale Applications. Future Generation Computer Systems, Vol. 53, December 2015, pp. 77-87, ISSN 0167-739X, http://dx.doi.org/10.1016/j.future.2015.06.002 (2015)

M. Bubak, B. Baliś, T. Bartyński, T. Gubała, D. Harężlak, M. Kasztelnik, M. Malawski, J. Meizner, P. Nowakowski, B. Wilk, and P. Suder: From VPH-Share to PL-Grid: Atmosphere as as a Frontend to Cloud Resources in Research Infrastructures. In: M. Bubak, M. Turała, K. Wiatr (Eds.), Proceedings of Cracow Grid Workshop - CGW'14, October 27-29 2014, ACC-Cyfronet AGH, 2014, Krakow, pp. 23-24 (2014)

K. Rycerz, M. Bubak, E. Ciepiela, M. Pawlik, O. Hoenen, D. Harężlak, B. Wilk, T. Gubała, J. Meizner, D. Coster: Enabling Multiscale Fusion Simulations on Distributed Computing Resources. In: M. Bubak, J. Kitowski, K. Wiatr (Eds.): eScience on Distributed Computing Infrastructure, LNCS, Vol. 8500. Springer, pp. 195-210 (2014)

M. Bubak, B. Baliś, D. Harężlak, M. Kasztelnik, P. Nowakowski, T. Bartyński, T. Gubala, M. Malawski, M. Pawlik, and B. Wilk: An approach to monitoring, data analytics, and decision support for levee supervision. In: K. Wiatr, J. Kitowski, M. Bubak (Eds) Proceedings of the Seventh ACC Cyfronet AGH Users’ Conference, ACC CYFRONET AGH, Kraków, ISBN 978-83-61433-09-5, pp. 75-76 (2014)