Publications related to MAPPER

2015

• K. Rycerz, M. Bubak,  E. Ciepiela, D. Harezlak, T. Gubala, J. Meizner, M. Pawlik, B. Wilk: Composing, Execution and Sharing of Multiscale Applications. Future Generation Computer Systems, Vol. 53, December 2015, pp. 77-87, ISSN 0167-739X, http://dx.doi.org/10.1016/j.future.2015.06.002 (2015)

2013

• T. Gubala, K. Prymula, P. Nowakowski, M. Bubak: Semantic Integration for Model-based Life Science Applications. In: SIMULTECH 2013 Proceedings of the 3rd International Conference on Simulation and Modeling Methodologies, Technologies and Applications, Reykjavik, Iceland 29 - 31 July, 2013, pp. 74-81 (accompanying poster) (2013)

• W. Funika, M. Janczykowski, K. Jopek, M. Grzegorczyk: An Ontology-based Approach to Performance Monitoring of MUSCLE-bound Multi-scale Applications, Procedia Computer Science, Volume 18, 2013, pp. 1126-1135, ISSN 1877-0509, DOI (2013)

• M. B. Belgacem, B. Chopard, J. Borgdorff, M. Mamoński, K. Rycerz, D. Harezlak: Distributed Multiscale Computations Using the MAPPER Framework, Procedia Computer Science, Volume 18, 2013, pp. 1106-1115, ISSN 1877-0509, DOI (2013)

• K. Rycerz, E. Ciepiela, G. Dyk, D. Groen, T. Gubala, D. Harezlak, M. Pawlik, J. Suter, S. Zasada, P. Coveney, M. Bubak: Support for Multiscale Simulations with Molecular Dynamics, Procedia Computer Science, Volume 18, 2013, pp. 1116-1125, ISSN 1877-0509, DOI (2013)

2012

• B. Bodziechowski, E. Ciepiela, M. Bubak: Assessment of Software Quality with Static Source Code Analysis: GridSpace2 Case Study, abstract for Cracow Grid Workshop 2012, 22-24 October 2012, Kraków, Poland (2012)

• K. Rycerz, D. Harężlak, G. Dyk, E. Ciepiela, T. Gubała, J. Meizner, and M. Bubak: Programming and Execution of Multiscale Applications, abstract for Cracow Grid Workshop 2012, 22-24 October 2012, Kraków, Poland (2012)

• Assessment of Software Quality with Static Source Code Analysis: GridSpace2 Case Study, Bartłomiej Bodziechowski; Master of Science Thesis supervised by Marian Bubak; consulted by Eryk Ciepiela; AGH University of Science and Technology, Krakow, Poland (presentation) (September 2012)

• Multiscale Applications in the Gridspace Virtual Laboratory, Paweł Pierzchała; Master of Science Thesis supervised by Katarzyna Rycerz; AGH University of Science and Technology, Krakow, Poland (September 2012)

• Multiscale Applications Composition and Execution Tools Based on Simulation Models Description Languages and Coupling Libraries, Marcin Nowak; Master of Science Thesis supervised by Katarzyna Rycerz; AGH University of Science and Technology, Krakow, Poland (June 2012)

• J. Borgdorff, C. Bona-Casas, M. Mamonski, K. Kurowski, T. Piontek, B. Bosak, K. Rycerz, E. Ciepiela, T. Gubala, D. Harezlak, M. Bubak, E. Lorenz, A. G. Hoekstra: A Distributed Multiscale Computation of a Tightly Coupled Model Using the Multiscale Modeling Language. In: Procedia CS 9, pp. 596-605 (2012)

2011

• K. Rycerz and M. Bubak: Building and Running Collaborative Distributed Multiscale Applications. In: W. Dubitzky, K. Kurowsky, B. Schott (Eds) Large-Scale Computing Techniques for Complex System Simulations, Chapter 6, pp. 111-130. J. Wiley and Sons (2011)

• K. Rycerz, M. Nowak, P. Pierzchala, M. Bubak, E. Ciepiela and D. Harezlak: Comparision of Cloud and Local HPC approach for MUSCLE-based Multiscale Simulations. In Proceedings of The Seventh IEEE International Conference on e-Science Workshops, Stockholm, Sweden, 5-8 December 2011. IEEE Computer Society, Washington, DC, USA, 81-88 (2011)

• Optimization of Application Execution in Virtual Laboratory, Mikolaj Baranowski; Master of Science Thesis supervised by Marian Bubak; AGH University of Science and Technology, Krakow, Poland (presentation) (2011)

• K. Rycerz, E. Ciepiela, J. Kocot, M. Nowak, P. Pierzchała, M. Bubak: Towards an Environment for Multiscale Applications, abstract at KUKDM in Zakopane, Poland (2011)