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DIstributed Computing Environments (DICE) Team
We are a group of computer scientists and IT experts from the Department of Computer Science AGH and ACC Cyfronet AGH. We are a curiosity- and research-driven team, specializing in large-scale distributed computing, HPC, Web and Cloud technologies. We develop new methods, tools and environments and we apply these solutions in e-Science, healthcare and industrial domains.


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Journal Articles

2022

  • Vinicius Varella,  Barbara de M. Quintela, Marek Kasztelnik, Marco Viceconti: Effect of particularisation size on the accuracy andefficiency of a multiscale tumours' growth model. International Journal for Numerical Methods in Biomedical Engineering (ISSN 2040-7939). http://doi.org/10.1002/cnm.3657 (2022)

  • Paulina Szadkowska, Adria-Jaume Roura, Bartosz Wojtas, Kamil Wojnicki, Sabina Licholai, Tomasz Waller, Tomasz Gubala, Kacper Zukowski, Michal Karpeta, Kinga Wilkus, Wojciech Kaspera, Sergiusz Nawrocki, Bozena Kaminska: Improvements in Quality Control and Library Preparation for Targeted Sequencing Allowed Detection of Potentially Pathogenic Alterations in Circulating Cell-Free DNA Derived from Plasma of Brain Tumor Patients. Cancers (Basel). 2022 Aug 12;14(16):3902. https://doi.org/10.3390/cancers14163902 (2022)

  • Piotr Frąckiewicz, Katarzyna Rycerz, Marek Szopa: Quantum absentminded driver problem revisited. Quantum Information Processing ; ISSN 1570-0755. — 2022 — vol. 21 iss. 1 art. no. 34, s. 1–21. — Bibliogr. s. 20–21, Abstr. — Publikacja dostępna online od: 2021-12-31. — tekst źródłowy: https://link.springer.com/content/pdf/10.1007/s11128-021-03377-6.pdf (2022)

2021

  • Julia Plewa, Joanna Sieńko, Katarzyna Rycerz: Variational algorithms for workflow scheduling problem in gate-based quantum devices. Computing and Informatics / Slovak Academy of Sciences. Institute of Informatics ; ISSN 1335-9150. — Tytuł poprz.: Computers and Artificial Intelligence. — 2021 — vol. 40 no. 4, s. 897–929. — Bibliogr. s. 926–928, Abstr. — XXII KKIO Software Engineering Conference : Krakow, 21–22 September 2021. — tekst źródłowy: http://www.cai.sk/ojs/index.php/cai/article/view/2021_4_897/1110 (2021)

  • Marian Bubak, Maciej Malawski, Renata G. Slota: Preface to the Special Issue on Software Engineering. Comput. Informatics 40(4) (2021)

2020

  • Bubak M., Czechowicz K., Gubała T., Hose D. R., Kasztelnik M., Malawski M., Meizner J., Nowakowski P. and Wood S.: The EurValve model execution environment. Interface Focus. 11: 20200006. http://doi.org/10.1098/rsfs.2020.0006 (2020)

  • Hluchý L. et al.: Heterogeneous Exascale Computing. In: Kovács L., Haidegger T., Szakál A. (eds) Recent Advances in Intelligent Engineering. Topics in Intelligent Engineering and Informatics, vol 14, pp. 81-110, Springer, Cham (2020), https://doi.org/10.1007/978-3-030-14350-3_5

  • L. Martí-Bonmatí, Á. Alberich-Bayarri, R. Ladenstein, I. Blanquer, J. Damian Segrelles, L. Cerdá-Alberich, P. Gkontra, B. Hero, J.M. García-Aznar, D. Keim, W. Jentner, K. Seymour, A. Jiménez-Pastor, I. González-Valverde, B. Martínez de las Heras, S. Essiaf, D. Walker, M. Rochette, M. Bubak, J. Mestres, M. Viceconti, G. Martí-Besa, A. Cañete, P. Richmond, K. Y. Wertheim, T. Gubala, M. Kasztelnik, J. Meizner, P. Nowakowski, S. Gilpérez, A. Suárez, M. Aznar, G. Restante and E. Neri: PRIMAGE project: predictive in silico multiscale analytics to support childhood cancer personalised evaluation empowered by imaging biomarkers, European Radiology Experimental 4:22, https://doi.org/10.1186/s41747-020-00150-9 (2020)

  • Michael Gerhards, Volker Sander, Miroslav Zivkovic, Adam Belloum, Marian Bubak: New approach to allocation planning of many-task workflows on clouds. Concurr. Comput. Pract. Exp. 32(2) (2020)

  • Jan Meizner, Piotr Nowakowski, Jan Kapala, Patryk Wojtowicz, Marian Bubak, Viet D. Tran, Martin Bobák, Maximilian Höb: Towards Exascale Computing Architecture and Its Prototype: Services and Infrastructure. Comput. Informatics 39(4): 860-880 (2020)

2017

  • M. Kasztelnik, E. Coto, M. Bubak, M. Malawski, P. Nowakowski, J. Arenas, A. Saglimbeni, D. Testi, A. F. Frangi: Support for Taverna Workflows in the VPH-Share Cloud Platform, Computer Methods and Programs in Biomedicine, 146, 37-46 (2017)

  • B. Baliś, M. Bubak, D. Harezlak, P. Nowakowski, M. Pawlik, and B. Wilk: Towards an operational database for real-time environmental monitoring and early warning systems. Procedia Computer Science 108C, 2250–2259 (2017)

  • B. Baliś, M. Bubak, D. Harezlak, P. Nowakowski, M. Pawlik, and B. Wilk: Smart levee monitoring and flood decision support system: reference architecture and urgent computing management. Procedia Computer Science 108C, 2220–2229 (2017)

  • A. H. Eckes, T. Gubała, P. Nowakowski, T. Szymczyszyn, R. Wells, J. A. Irwin, C. Horro, J. M. Hancock, G. King, S. C. Dyer, W. Jurkowski: Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data [version 1; referees: 3 approved]. F1000Research 2017, 6:465 (doi: 10.12688/f1000research.11301.1) (2017)
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